Pairwise sequence alignment Help Icon

  the disclaimer   and I agree with the conditions and limitations associated with the usage of the software
 
  • Pairwise sequence alignment parameters
    Minimum similarity to keep results (0-100%): Gap creation penalty (1-100):
    Minimum overlap to keep results (0-100%): Gap extension penalty (1-10):
    Minimum overlap for rating reward (0-100%): Word size (1-256):
    Maximum alignments to display (1-1000): Penalty for a nucleotide mismatch:
    Select sorting mode:
    select
    Reward for a nucleotide match:
    Select the reference(s) file(s) to be used for the alignment:
    NameLocationStatus#Match(s) found
     http://www.westerdijkinstitute.nl/fusarium/http://www.westerdijkinstitute.nl/fusarium/Unavailable  000
     http://www.westerdijkinstitute.nl/dermatophytes/http://www.westerdijkinstitute.nl/dermatophytes/Unavailable  000
     http://www.westerdijkinstitute.nl/indoor/http://www.westerdijkinstitute.nl/indoor/Unavailable  000
     http://www.westerdijkinstitute.nl/Morchella/http://www.westerdijkinstitute.nl/Morchella/Unavailable  000
     http://www.westerdijkinstitute.nl/collections/http://www.westerdijkinstitute.nl/collections/Unavailable  000
    EFSeqhttp://its.mycologylab.org/http://its.mycologylab.org/Reachable E:\BioloMICSBasedBio\ITS.mycologylab.org\Alignments\DB7.100
    ITSSeqhttp://its.mycologylab.org/http://its.mycologylab.org/Reachable E:\BioloMICSBasedBio\ITS.mycologylab.org\Alignments\DB48.83600
    Bipolarishttp://mlst.mycologylab.org/http://mlst.mycologylab.org/Reachable E:\BioloMICSBasedBio\mlstnew.mycologylab.org\Alignments\DB4.3400
    CGattiihttp://mlst.mycologylab.org/http://mlst.mycologylab.org/Reachable E:\BioloMICSBasedBio\mlstnew.mycologylab.org\Alignments\DB5.88800
    CNeofhttp://mlst.mycologylab.org/http://mlst.mycologylab.org/Reachable E:\BioloMICSBasedBio\mlstnew.mycologylab.org\Alignments\DB4.3200
    PJhttp://mlst.mycologylab.org/http://mlst.mycologylab.org/Reachable E:\BioloMICSBasedBio\mlstnew.mycologylab.org\Alignments\DB0.66800
    Scedohttp://mlst.mycologylab.org/http://mlst.mycologylab.org/Reachable E:\BioloMICSBasedBio\mlstnew.mycologylab.org\Alignments\DB2.06400
    bioseq.txthttp://pycc.bio-aware.com/http://pycc.bio-aware.com/Reachable E:\BioloMICSBasedBio\PYCCNew.bio-aware.com\Alignments\DB14.8200
    NewYeast.txthttp://pycc.bio-aware.com/http://pycc.bio-aware.com/Reachable E:\BioloMICSBasedBio\PYCCNew.bio-aware.com\Alignments\DB2.40800
    NField.txthttp://pycc.bio-aware.com/http://pycc.bio-aware.com/Reachable E:\BioloMICSBasedBio\PYCCNew.bio-aware.com\Alignments\DB1.35600
    PYCChttp://pycc.bio-aware.com/http://pycc.bio-aware.com/Reachable E:\BioloMICSBasedBio\PYCCNew.bio-aware.com\Alignments\DB33.32400
    Yeast.txthttp://pycc.bio-aware.com/http://pycc.bio-aware.com/Reachable E:\BioloMICSBasedBio\PYCCNew.bio-aware.com\Alignments\DB72.39600
    PasteurMOULDhttp://fungibank.pasteur.fr/http://fungibank.pasteur.fr/Reachable E:\BioloMICSBasedBio\fungibank.pasteur.fr\Alignments\DB23.6200
    PasteurYEASThttp://fungibank.pasteur.fr/http://fungibank.pasteur.fr/Reachable E:\BioloMICSBasedBio\fungibank.pasteur.fr\Alignments\DB21.1600
    Non-redundant GenBankhttp://blast.ncbi.nlm.nih.gov/Blast.cgihttp://blast.ncbi.nlm.nih.gov/Blast.cgiReachable nr0028
 
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