Mycobank in English Mycobank en français MycoBank 中文版 MycoBank بالعربي MycoBank in deutsch MycoBank em Português MycoBank en español MycoBank in nederlands Mycobank ในภาษาอังกฤษ
 
Help on BioloMICSNet

How to search our databases button-SmallHelp

The BioloMICSNet Software facilitates interrogation of the available databases. The Basic search allows you to search on any kind of field.

Should you need to build more complex queries, then the Advanced search ( button-SmallHelp) will allow you to customize the query.

The following link : BioloMICS Search will redirect you to the Search page

Similarity based on on-line pair-wise alignments button-SmallHelp

The BioloMICSNet Software facilitates identifications by the performance of on-line pair-wise and probabilistic sequences (DNA and/or Proteins) identifications.

The following link : BioloMICS Sequence Pairwise Alignment will redirect you to the BioloMICS Sequence Pairwise Alignment page

Polyphasic online identification button-SmallHelp

The BioloMICSNet Software has facilitated performance of on-line polyphasic identifications since the first version produced in 1999. Depending on the databases and the criteria that are available, a wide range of characteristics can be entered, combined and analyzed to obtain an identification of an unknown. The more criteria used, the more likely the identification will be reliable. The current on-line version of the software also facilitates for the production of phenetic trees.

For a complete description on fields and algorithms used in the polyphasic identification : button-SmallHelp

The following link : BioloMICS Polyphasic Identification will redirect you to the BioloMICS Polyphasic Identification page

Deposit of user's data

BioloMICSNet users willing to deposit their data or to order items using the cart system, will have to register. We need to be able to contact the depositor/client For specific information (e.g. BioloMICSNet number, possible points of clarification, for example regarding the name, actual date of publication, etc), and we also need to ensure all entries are genuine.

To register for the first time follow the steps below:

1. Enter your email address (see Register New User), click on the 'Create New Profile' button to receive a provisional password by email (this is to make sure that the provided email is real and that you are the person that can open the given email).

2. Read your email and go to the Register menu again. Enter your email and password (obtained by email). Click on the "Login" button and access the BioloMICSNet profile form where personal information has to be entered. Change the password and personalize it. Click on the "Save profile" button. You will then be registered and ready to deposit new items (strains, species, etc) or to order items on-line via the Cart system.

Link your website
Software developers can connect their website to BioloMICSNet.

Basic address 1:
http://www.mycobank.org/BioloMICS.aspx?Table=V2&Descr=V3&Fields=V4&ExactMatch=V5

Basic address 2:
http://www.mycobank.org/BioloMICS.aspx?Table=V2&Rec=V6&Fields=V4&ExactMatch=V5

where,

V1: Database Name (see 'Database' block ' below) where to find the wanted record (see table below for more information)

V2: Table Layout Name (see 'Fields Code' block below) where to find the wanted record (see table below for more information)

V3: Name of the wanted record

V4: Fields code (see 'Fields code' below) to be displayed. To display all fields use the 'All' value (ex.: &Fields =All). To display only one field, just paste the code of the field next to the & Fields tag (ex.: &Fields =E1). To display several fields, use several & Fields tag (ex.: &Fields=E1&Fields=T4&Fields=P8). Only the fields that are not empty will be displayed. See table below for more information on fields codes.

V5: Exact match for the queries. Use T for true or F for False (ex.: &ExactMatch =T). Relevant if V3 (Name specified). 'ExactMatch=T' will search for record where Name equals the given value while 'ExactMatch=F' will search for records where Name contains the given value.

V6: Unique ID of a given record (ex.: &Rec =1)





Information details on Database : MycoBank in English


Fields description for Layout : Mycobank

Field CaptionField NameField CodeField type
General information   
 SummaryE3787E : Text, administrative field
 SynonymyE4060E : Text, administrative field
 MycoBank #MycoBankNr_I : Internal Use
 EpithetEpithet_E : Text, administrative field
 RankRank_Pt_RLink : Link to one or more records
 Orthographic variant ofOrthVariantOf_Pt_RLink : Link to one or more records
 AuthorsAuthors_E : Text, administrative field
 Authors (abbreviated)AuthorsAbbrev_E : Text, administrative field
 LiteratureLiterature_Pt_RLink : Link to one or more records
 Page #LiteraturePageNr_E : Text, administrative field
 Journal or bookLiteratureJournalBook_E : Text, administrative field
 Year of publicationNameYear_H : DateTime (YYYYMMDDHHmmss)
 Name typeNameType_T : Discrete data, 15 combinations of 4 independant states
 GenderGender_T : Discrete data, 15 combinations of 4 independant states
 Date publicDatePublic_H : DateTime (YYYYMMDDHHmmss)
 Name statusNameStatus_T : Discrete data, 15 combinations of 4 independant states
 Comment on name statusNameStatusExplanation_E : Text, administrative field
 RemarksRemarks_E : Text, administrative field
 Sanctioning ref.SanctioningRef_E : Text, administrative field
 Sanctioned bySanctionedBy_T : Discrete data, 15 combinations of 4 independant states
 Sanctioning nameSanctioningName_Pt_RLink : Link to one or more records
 Validated byValidatedBy_Pt_RLink : Link to one or more records
 Type specimen or ex typeSpecimen_Pt_RLink : Link to one or more records
 More specimensRLink4703RLink : Link to one or more records
 Human pathogenicity codeHumanPathogenicityCode_T : Discrete data, 15 combinations of 4 independant states
 Plant pathogenicity codePlantPathogenicityCode_T : Discrete data, 15 combinations of 4 independant states
 Code toxicityCodeToxicity_T : Discrete data, 15 combinations of 4 independant states
Classification and associated taxa   
 Current nameCurrentName_Pt_RLink : Link to one or more records
 ClassificationClassification_O : Ontology, classification field
 Type nameTypeName_Pt_RLink : Link to one or more records
 BasionymBasedOn_Pt_RLink : Link to one or more records
 Obligate or homotypic synonymsObligateSynonyms_Pt_RLink : Link to one or more records
 Anamorph synonymsAnamorph_Pt_RLink : Link to one or more records
 Teleomorph synonymsTeleomorph_Pt_RLink : Link to one or more records
 Facultative or heterotypic synonymsFacultativeSynonyms_Pt_RLink : Link to one or more records
Descriptions   
 DescriptionDescription_Pt_RLink : Link to one or more records
 ProtologProtolog_Pt_RLink : Link to one or more records
Link out to external resources   
 Other fungal linksExternalLinks_U : URL
 Bibliography linksU3732U : URL
 General linksU3733U : URL
 Molecular linksU3734U : URL
 Specimens and strains linksU3735U : URL
Files   
 Associated filesFiles_Pt_FLink : Link to File

Examples of hyperlinks for Table Mycobank in Database MycoBank in English
Example 1: Record #1 [Abortiporus biennis], Display all Fields
http://www.mycobank.org/BioloMICS.aspx?Table=Mycobank&Rec=1&Fields=All&ExactMatch=T
Example 2: Record Name is 'Abortiporus biennis' , Display all Fields, Exact Match Searching
http://www.mycobank.org/BioloMICS.aspx?Table=Mycobank&Name=Abortiporus biennis&Fields=All&ExactMatch=T
Example 3: Record Name containing 'Abortiporus' , Display all Fields, Non Exact Match Searching
http://www.mycobank.org/BioloMICS.aspx?Table=Mycobank&Name=Abortiporus&Fields=All&ExactMatch=F
Example 4: Record Name containing 'Absidia' , Display Field 'E3787' (Summary), Non Exact Match Searching
http://www.mycobank.org/BioloMICS.aspx?Table=Mycobank&Name=Absidia&Fields=E3787&ExactMatch=F
Example 5: Record Name is 'Absidia cylindrospora var. cylindrospora' , Display Field 'E3787' (Summary) and 'Files_Pt_' (Associated files) , Exact Match Searching
http://www.mycobank.org/BioloMICS.aspx?Table=Mycobank&Name=Absidia cylindrospora var. cylindrospora&Fields=E3787&Fields=Files_Pt_&ExactMatch=T


Fields description for Layout : Mycobank literature

Field CaptionField NameField CodeField type
 TitleTitle_E : Text, administrative field
 AuthorsAuthors_E : Text, administrative field
 EditorsEditors_E : Text, administrative field
 YearYear_D : Continuous data, single value
 JournalJournal_Pt_RLink : Link to one or more records
 VolumeVolume_E : Text, administrative field
 IssueIssue_E : Text, administrative field
 First pagePageFrom_E : Text, administrative field
 Last pagePageTo_E : Text, administrative field
 ISBNISBN_E : Text, administrative field
 PublisherPublisher_E : Text, administrative field
 DOIDOI_U : URL
 KeywordsKeywords_E : Text, administrative field
 AbstractAbstract_E : Text, administrative field
 HyperlinkHyperlink_U : URL
 Document typeDocType_T : Discrete data, 15 combinations of 4 independant states
 EditionEdition_D : Continuous data, single value
 SeriesSeries_E : Text, administrative field
 Title (abbreviated)TitleAbbrev_E : Text, administrative field
 BookBook_Pt_RLink : Link to one or more records
 PubMed IDPubMedId_E : Text, administrative field
 Hyperlink2HyperlinkTo_E : Text, administrative field
 Associated taxaTaxonName_Pt_RLink : Link to one or more records
 Full text linkFLink3746FLink : Link to File
 SummaryE3811E : Text, administrative field
 Journal nameE4332E : Text, administrative field
 Old value Name fieldE4697E : Text, administrative field

Examples of hyperlinks for Table Mycobank literature in Database MycoBank in English
Example 1: Record #2 [Petch, T. 1932. A list of the entomogenous fungi of Great Britain. Transactions of the British Mycological Society. 17(3):170-178], Display all Fields
http://www.mycobank.org/BioloMICS.aspx?Table=Mycobank literature&Rec=2&Fields=All&ExactMatch=T
Example 2: Record Name is 'Petch, T. 1932. A list of the entomogenous fungi of Great Britain. Transactions of the British Mycological Society. 17(3):170-178' , Display all Fields, Exact Match Searching
http://www.mycobank.org/BioloMICS.aspx?Table=Mycobank literature&Name=Petch, T. 1932. A list of the entomogenous fungi of Great Britain. Transactions of the British Mycological Society. 17(3):170-178&Fields=All&ExactMatch=T
Example 3: Record Name containing 'Petch,' , Display all Fields, Non Exact Match Searching
http://www.mycobank.org/BioloMICS.aspx?Table=Mycobank literature&Name=Petch,&Fields=All&ExactMatch=F
Example 4: Record Name containing 'Hausner,' , Display Field 'Title_' (Title), Non Exact Match Searching
http://www.mycobank.org/BioloMICS.aspx?Table=Mycobank literature&Name=Hausner,&Fields=Title_&ExactMatch=F
Example 5: Record Name is 'Hausner, G.; Eyjólfsdóttir, G.G.; Reid, J.; Klassen, G.R. 1992. Two additional species of the genus Togninia. Canadian Journal of Botany. 70(4):724-734' , Display Field 'Title_' (Title) and 'E4697' (Old value Name field) , Exact Match Searching
http://www.mycobank.org/BioloMICS.aspx?Table=Mycobank literature&Name=Hausner, G.; Eyjólfsdóttir, G.G.; Reid, J.; Klassen, G.R. 1992. Two additional species of the genus Togninia. Canadian Journal of Botany. 70(4):724-734&Fields=Title_&Fields=E4697&ExactMatch=T


Fields description for Layout : Mycobank_Advanced

Field CaptionField NameField CodeField type
General information   
 SummaryE3787E : Text, administrative field
 MycoBank #MycoBankNr_I : Internal Use
 EpithetEpithet_E : Text, administrative field
 RankRank_Pt_RLink : Link to one or more records
 Orthographic variant ofOrthVariantOf_Pt_RLink : Link to one or more records
 AuthorsAuthors_E : Text, administrative field
 Authors (abbreviated)AuthorsAbbrev_E : Text, administrative field
 LiteratureLiterature_Pt_RLink : Link to one or more records
 Page #LiteraturePageNr_E : Text, administrative field
 Year of publicationNameYear_H : DateTime (YYYYMMDDHHmmss)
 Name typeNameType_T : Discrete data, 15 combinations of 4 independant states
 GenderGender_T : Discrete data, 15 combinations of 4 independant states
 Date publicDatePublic_H : DateTime (YYYYMMDDHHmmss)
 Name statusNameStatus_T : Discrete data, 15 combinations of 4 independant states
 Comment on name statusNameStatusExplanation_E : Text, administrative field
 RemarksRemarks_E : Text, administrative field
 Sanctioning ref.SanctioningRef_E : Text, administrative field
 Sanctioned bySanctionedBy_T : Discrete data, 15 combinations of 4 independant states
 Sanctioning nameSanctioningName_Pt_RLink : Link to one or more records
 Validated byValidatedBy_Pt_RLink : Link to one or more records
 Type specimen or ex typeSpecimen_Pt_RLink : Link to one or more records
 Attached pdf filesAttachedPdfFiles_FLink : Link to File
Classification and associated taxa   
 Current nameCurrentName_Pt_RLink : Link to one or more records
 ClassificationClassification_O : Ontology, classification field
 Type nameTypeName_Pt_RLink : Link to one or more records
 BasionymBasedOn_Pt_RLink : Link to one or more records
 Obligate or homotypic synonymsObligateSynonyms_Pt_RLink : Link to one or more records
 Anamorph synonymsAnamorph_Pt_RLink : Link to one or more records
 Teleomorph synonymsTeleomorph_Pt_RLink : Link to one or more records
 Facultative or heterotypic synonymsFacultativeSynonyms_Pt_RLink : Link to one or more records
Descriptions   
 DescriptionDescription_Pt_RLink : Link to one or more records
 ProtologProtolog_Pt_RLink : Link to one or more records
Link out to external resources   
 Other fungal linksExternalLinks_U : URL
 Bibliography linksU3732U : URL
 General linksU3733U : URL
 Molecular linksU3734U : URL
 Specimens and strains linksU3735U : URL
Files   
 Associated filesFiles_Pt_FLink : Link to File

Examples of hyperlinks for Table Mycobank_Advanced in Database MycoBank in English
Example 1: Record #1 [Abortiporus biennis], Display all Fields
http://www.mycobank.org/BioloMICS.aspx?Table=Mycobank_Advanced&Rec=1&Fields=All&ExactMatch=T
Example 2: Record Name is 'Abortiporus biennis' , Display all Fields, Exact Match Searching
http://www.mycobank.org/BioloMICS.aspx?Table=Mycobank_Advanced&Name=Abortiporus biennis&Fields=All&ExactMatch=T
Example 3: Record Name containing 'Abortiporus' , Display all Fields, Non Exact Match Searching
http://www.mycobank.org/BioloMICS.aspx?Table=Mycobank_Advanced&Name=Abortiporus&Fields=All&ExactMatch=F
Example 4: Record Name containing 'Absidia' , Display Field 'E3787' (Summary), Non Exact Match Searching
http://www.mycobank.org/BioloMICS.aspx?Table=Mycobank_Advanced&Name=Absidia&Fields=E3787&ExactMatch=F
Example 5: Record Name is 'Absidia cylindrospora var. cylindrospora' , Display Field 'E3787' (Summary) and 'Files_Pt_' (Associated files) , Exact Match Searching
http://www.mycobank.org/BioloMICS.aspx?Table=Mycobank_Advanced&Name=Absidia cylindrospora var. cylindrospora&Fields=E3787&Fields=Files_Pt_&ExactMatch=T


Fields description for Layout : Mycobank specimens

Field CaptionField NameField CodeField type
 Collected byCollectedBy_E : Text, administrative field
 Collectors numberCollectorsNumber_E : Text, administrative field
 Collection dateCollectionDate_H : DateTime (YYYYMMDDHHmmss)
 Country (state)Locality_Pt_RLink : Link to one or more records
 Location detailsLocationDetails_E : Text, administrative field
 HostHost_E : Text, administrative field
 Substrate detailsSubstrateDetails_E : Text, administrative field
 HabitatHabitat_E : Text, administrative field
 StatusStatus_T : Discrete data, 15 combinations of 4 independant states
 Remarks specimenRemarksSpecimen_E : Text, administrative field
 Latitude,LongitudeLatitude_Longitude_L : GIS Location (latitude, longitude, altitude, precision)
 Identified asIdentifiedAs_RLink : Link to one or more records
 Identified byIdentifiedBy_E : Text, administrative field
 Herbarium recordsHerbarium_Pt_Back_RLink : Link to one or more records
 DescriptionsDescription_Pt_RLink : Link to one or more records
 LiteratureLiterature_Pt_RLink : Link to one or more records
 Related Web siteRelatedWebSite_U : URL
 Strain numbersStrainNumbers_E : Text, administrative field
 Isolated byIsolatedBy_E : Text, administrative field
 Isolation methodIsolationMethod_E : Text, administrative field
 Sexual stateSexualState_E : Text, administrative field
 Conditions for growthConditionsForGrowth_E : Text, administrative field
 Conditions for sporulationConditionsForSporulation_E : Text, administrative field
 PathogenicityPathogenicity_E : Text, administrative field
 Literature remarksLiteratureRemarks_E : Text, administrative field
 Reference typeLiteratureReferenceType_E : Text, administrative field
 Page numberLiteraturePageNr_E : Text, administrative field
 Journal or bookLiteratureJournalBook_E : Text, administrative field
 Identification dateIdentificationDate_H : DateTime (YYYYMMDDHHmmss)
 DNA sequence 28S rDNADNAsequence28SrDNA_NLink : Link to Sequence
 DNA sequence 18S rDNADNAsequence18SrDNA_NLink : Link to Sequence
 DNA sequence ITS rDNADNAsequenceITSrDNA_NLink : Link to Sequence
 DNA sequence Beta tubulineDNAsequenceBetaTubuline_NLink : Link to Sequence
 DNA sequence Actin geneDNAsequenceActinGene_NLink : Link to Sequence
 DNA sequence Elongation factorDNAsequenceElongationFactor_NLink : Link to Sequence
 Other DNA sequencesOtherDNAsequences_NLink : Link to Sequence
 RPB1 sequenceRPB1Sequence_NLink : Link to Sequence
 RPB2 sequenceRPB2Sequence_NLink : Link to Sequence
 ATP6 sequenceATP6Sequence_NLink : Link to Sequence
 Chitine synthetaseChitineSynthetase_NLink : Link to Sequence
 Files_PtFiles_Pt_FLink : Link to File
 Taxon nameRLink4703RLink : Link to one or more records

Examples of hyperlinks for Table Mycobank specimens in Database MycoBank in English
Example 1: Record #1 [Specimen #1], Display all Fields
http://www.mycobank.org/BioloMICS.aspx?Table=Mycobank specimens&Rec=1&Fields=All&ExactMatch=T
Example 2: Record Name is 'Specimen #1' , Display all Fields, Exact Match Searching
http://www.mycobank.org/BioloMICS.aspx?Table=Mycobank specimens&Name=Specimen #1&Fields=All&ExactMatch=T
Example 3: Record Name containing 'Specimen' , Display all Fields, Non Exact Match Searching
http://www.mycobank.org/BioloMICS.aspx?Table=Mycobank specimens&Name=Specimen&Fields=All&ExactMatch=F
Example 4: Record Name containing 'Specimen' , Display Field 'CollectedBy_' (Collected by), Non Exact Match Searching
http://www.mycobank.org/BioloMICS.aspx?Table=Mycobank specimens&Name=Specimen&Fields=CollectedBy_&ExactMatch=F
Example 5: Record Name is 'Specimen #10' , Display Field 'CollectedBy_' (Collected by) and 'RLink4703' (Taxon name) , Exact Match Searching
http://www.mycobank.org/BioloMICS.aspx?Table=Mycobank specimens&Name=Specimen #10&Fields=CollectedBy_&Fields=RLink4703&ExactMatch=T


Fields description for Layout : Taxa descriptions

Field CaptionField NameField CodeField type
 CitationCitation_Pt_RLink : Link to one or more records
 Literature remarksLiteratureRemarks_E : Text, administrative field
 LiteratureLiterature_Pt_RLink : Link to one or more records
 Reference typeLiteratureReferenceType_E : Text, administrative field
 Page numberLiteraturePageNr_E : Text, administrative field
 Journal or bookLiteratureJournalBook_E : Text, administrative field
 Remarks (public)RemarksInternet_E : Text, administrative field
 Remarks (internal)Remarks_E : Text, administrative field
 Description typeDescriptionType_T : Discrete data, 15 combinations of 4 independant states
 DescriptionDescription_E : Text, administrative field
 Taxon nameRLink3626RLink : Link to one or more records

Examples of hyperlinks for Table Taxa descriptions in Database MycoBank in English
Example 1: Record #1 [Scleroderma areolatum Ehrenberg.], Display all Fields
http://www.mycobank.org/BioloMICS.aspx?Table=Taxa descriptions&Rec=1&Fields=All&ExactMatch=T
Example 2: Record Name is 'Scleroderma areolatum Ehrenberg.' , Display all Fields, Exact Match Searching
http://www.mycobank.org/BioloMICS.aspx?Table=Taxa descriptions&Name=Scleroderma areolatum Ehrenberg.&Fields=All&ExactMatch=T
Example 3: Record Name containing 'Scleroderma' , Display all Fields, Non Exact Match Searching
http://www.mycobank.org/BioloMICS.aspx?Table=Taxa descriptions&Name=Scleroderma&Fields=All&ExactMatch=F
Example 4: Record Name containing 'Crepidotus' , Display Field 'Citation_Pt_' (Citation), Non Exact Match Searching
http://www.mycobank.org/BioloMICS.aspx?Table=Taxa descriptions&Name=Crepidotus&Fields=Citation_Pt_&ExactMatch=F
Example 5: Record Name is 'Crepidotus cesatii (Rab.) Sacc. var. cesatii' , Display Field 'Citation_Pt_' (Citation) and 'RLink3626' (Taxon name) , Exact Match Searching
http://www.mycobank.org/BioloMICS.aspx?Table=Taxa descriptions&Name=Crepidotus cesatii (Rab.) Sacc. var. cesatii&Fields=Citation_Pt_&Fields=RLink3626&ExactMatch=T


Fields description for Layout : Thesaurus

Field CaptionField NameField CodeField type
 EtymologyE4335E : Text, administrative field
 DescriptionE4336E : Text, administrative field
 Glossary linkRLink4340RLink : Link to one or more records

Examples of hyperlinks for Table Thesaurus in Database MycoBank in English
Example 1: Record #2 [a-], Display all Fields
http://www.mycobank.org/BioloMICS.aspx?Table=Thesaurus&Rec=2&Fields=All&ExactMatch=T
Example 2: Record Name is 'a-' , Display all Fields, Exact Match Searching
http://www.mycobank.org/BioloMICS.aspx?Table=Thesaurus&Name=a-&Fields=All&ExactMatch=T
Example 3: Record Name containing 'a-' , Display all Fields, Non Exact Match Searching
http://www.mycobank.org/BioloMICS.aspx?Table=Thesaurus&Name=a-&Fields=All&ExactMatch=F
Example 4: Record Name containing 'ablastous' , Display Field 'E4335' (Etymology), Non Exact Match Searching
http://www.mycobank.org/BioloMICS.aspx?Table=Thesaurus&Name=ablastous&Fields=E4335&ExactMatch=F
Example 5: Record Name is 'ablastous' , Display Field 'E4335' (Etymology) and 'RLink4340' (Glossary link) , Exact Match Searching
http://www.mycobank.org/BioloMICS.aspx?Table=Thesaurus&Name=ablastous&Fields=E4335&Fields=RLink4340&ExactMatch=T

Contact(s) for Database : MycoBank in English

The following link : BioloMICS Contact information will redirect you to the BioloMICS Contact information page

Search Service
Click here for full description.

Insert and update Service
Click here for full description.

Insert and update Mycobank Service
Click here for full description.

User Profile Service
Click here for full description.

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BioAware makes no representation or warranty whatsoever regarding the performance, use or results of the software, including without limitation, any express or implied warranties, including without limitation, the implied warranties of merchant ability and fitness for a particular purpose. In no event shall BioAware be liable for any direct, indirect, incidental, special, exemplary, or consequential damages (including without limitation, procurement of substitute goods or services, loss of use, data, or profits, or business interruption) however caused and not withstanding any theory of liability, whether in contrast, strict liability, or tort (including negligence or otherwise) arising in any way out of the software, even if advised of the possibility or probality of such damage. BioAware shall beat no responsability for the accuracy or quality of information or other results (The Information) obtained through its provision of the software, nor the use or misuse of any information by any user of the information, unauthorized use of any information protected by intellectual property rights. The user acknowledges and agrees that BioAware is merely permitting access to the information supplied throught the software, and that the user is responsible for the accuracy, truthfulness and all other matters relating to such information. Further, the user acknowledges and agrees that the software is subject to interruption from time to time and the user's information may not be accessed by its intended user.