How to search our databases
The BioloMICSNet Software facilitates interogation of the available databases. Several ways of searching can be used. The first is a simple text query tool that will search for a given text in all text fields of the selected database and table.
The second tool facilitates retrieval of some records using the unique identifier of the record,
such as the collection accession number of a given strains or specimen.
A third facility allows searches by species and/or genera names.
An advanced searching tool is also available to facilitate performance of complex enquiries. This is a bit more difficult to use but with a minimum reading of the instruction one should be able to understand the way it works. Click me to see how these tools are working.
Similarity based on on-line pair-wise alignments
The BioloMICSNet Software facilitates identifiactions by the perfomance of on-line
pair-wise and probabilistic sequences (DNA and/or Proteins) identifications. Click me to see how it works.
Polyphasic online identification
The BioloMICSNet Software has facilitated perfomance of on-line polyphasic identifications since the first version produced in 1999. Depending on the databases and the criteria that
are available, a wide range of characteristics can be entered, combined and analyzed
to obtain an identification of an unknown. The more criteria used, the more likely the identification
will be reliable. The current on-line version of
the software also facilitates for the
production of phenetic trees. Click me to see how it works.
Deposit of user's data
BioloMICSNet users willing to deposit their data or to order items using the cart
system, will have to register.
We need to be able to contact the depositor/client
for specific information
(e.g. BioloMICSNet number, possible points of clarification,
for example regarding the name,
actual date of publication, etc), and we also need
to ensure all entries are genuine.
To register for the first time follow the steps below:
1. Enter your email address (see home page), click on the "create profile"
button to receive a provisional password by email (this is to make
sure that the provided email is real and that you are the person
that can open the given email).
3. Read your email and go to the Register
menu again. Enter your email and password (obtained by email). Click
on the "Login" button and access the BioloMICSNet profile
form where personal information has to be entered. Change the
password and personalize it. Click on the "Save
profile" button. You will then be registered and ready to deposit
new items
(strains, species, etc) or to order items on-line via the Cart system.
Link your website
Software developers can connect their website to BioloMICSNet.
Basic address 1:
http://www.mycobank.org/yeast/BioloMICS.aspx?Link=T&DB=V1&Table=V2&Descr=V3&Fields=V4&ExactMatch=V5
Basic address 2:
http://www.mycobank.org/yeast/BioloMICS.aspx?Link=T&DB=V1&Table=V2&Rec=V6&Fields=V4&ExactMatch=V5
where,
V1: Database number (see 'DB #' below) where to find the wanted record (see table below for more information)
V2: Table number (see 'Table #' below) where to find the wanted record (see table below for more information)
V3: Description or name of the wanted record
V4: Fields code (see 'Fields code' below) to be displayed. To display all fields use the 'All' value (ex.: &Fields=All). To display only one field, just paste the code of the field next to the &Fields tag (ex.: &Fields=E1). To display several fields, use several &Fields tags (ex.: &Fields=E1&Fields=T4&Fields=P8). Only the fields that are not empty will be displayed. See table below for more information on fields codes.
V5: Exact match for the queries. Use T for true or F for False (ex.: &ExactMatch=T)
V6: Unique ID of a given record (ex.: &Rec=1)
Information details on database(s), table(s) and fields:
|
|
| 0 | Yeast | |
|
| | |
|
|
|
| 0 | Species |
|
| | |
|
|
|
| S1 | Number of ascospores per ascus |
|
| T1 | Reddish diffusing pigment |
|
| T2 | Colony margin |
|
| T3 | Hyphae |
|
| T4 | Asci evanescence |
|
| T8 | Basidia septation |
|
| T11 | Basidia catenate-solitary |
|
| T12 | Teliospores |
|
| T21 | D-Glucose (F1) |
|
| T22 | D-Galactose (F2) |
|
| T23 | Maltose (F3) |
|
| T24 | Me a-D-Glucoside (F4) |
|
| T25 | Sucrose (F5) |
|
| T26 | a,a-Trehalose (F6) |
|
| T27 | Melibiose (F7) |
|
| T28 | Lactose (F8) |
|
| T29 | Cellobiose (F9) |
|
| T30 | Melezitose (F10) |
|
| T31 | Raffinose (F11) |
|
| T32 | Inulin (F12) |
|
| T33 | Starch (F13) |
|
| E63 | Genus authors |
|
| T34 | D-Xylose (F14) |
|
| T35 | 50% D-Glucose (O4) |
|
| T36 | 60% D-Glucose (O5) |
|
| T37 | Starch formation (M1) |
|
| T38 | Acid acetic production (M2) |
|
| T39 | Urea hydrolysis (M3) |
|
| T40 | Diazonium Blue B reaction (M4) |
|
| T41 | Methanol (C41) |
|
| T42 | Ethanol (C42) |
|
| T43 | Sexual reproduction |
|
| C1 | Colony colour |
|
| C2 | Colony surface appearance |
|
| C3 | Colony texture |
|
| C4 | Asexual reproduction |
|
| C5 | Cell shape |
|
| C6 | Ascospores appearance |
|
| C7 | Conjugation |
|
| D1 | Coenzyme Q system |
|
| E7 | Identification remarks |
|
| E9 | Genus publication date |
|
| E64 | Basionym |
|
| E10 | Species publication date |
|
| E11 | Species authors |
|
| E12 | Strains studied |
|
| E15 | Substrate of isolation |
|
| E17 | Bibliographic references |
|
| E18 | Geographical distribution |
|
| E19 | Biotechnological and industrial significance |
|
| E22 | Ecological aspects |
|
| E23 | MIC data |
|
| E38 | Comments |
|
| E41 | Media for optimal growth (on solid media) |
|
| E43 | Conditions for sporulation |
|
| E44 | Agricultural significance |
|
| A1 | Yeasts physiological data |
|
| N1 | rDNA sequences 26S |
|
| N2 | rDNA sequences 18S |
|
| N3 | rDNA sequences ITS |
|
| B1 | Bibliography |
|
| P1 | Pictures |
|
| P2 | Original sequence files |
|
| E59 | Medical significance |
|
| E60 | Genus name |
|
| E61 | Species epithet |
|
| C8 | Temperatures growths tests |
|
| L1 | Latitude, longitude coordinates where collected |
|
| N5 | Actin |
|
| N6 | RPB1 |
|
| N7 | RPB2 |
|
| N8 | Elongation Factor 1 |
|
| N9 | Beta tubuline |
|
| E62 | Treatment |
|
| | |
|
|
|
| Link 1: database #0 (Yeast), table #0 (Species), record #1 (Aciculoconidium aculeatum), display all fields |
|
| http://www.mycobank.org/yeast/BioloMICS.aspx?Link=T&DB=0&Table=0&Rec=1&Fields=All&ExactMatch=T |
|
| Link 2: database #0 (Yeast), table #0 (Species), record description is 'Aciculoconidium aculeatum', display all fields, exact match searching |
|
| http://www.mycobank.org/yeast/BioloMICS.aspx?Link=T&DB=0&Table=0&Descr=Aciculoconidium aculeatum&Fields=All&ExactMatch=T |
|
| Link 3: database #0 (Yeast), table #0 (Species), record(s) description containing 'Aci', display all fields, non exact match searching |
|
| http://www.mycobank.org/yeast/BioloMICS.aspx?Link=T&DB=0&Table=0&Descr=Aci&Fields=All&ExactMatch=T |
|
| Link 4: database #0 (Yeast), table #0 (Species), record(s) description containing 'Zym', display field 'S1' (Number of ascospores per ascus), non exact match searching |
|
| http://www.mycobank.org/yeast/BioloMICS.aspx?Link=T&DB=0&Table=0&Descr=Zym&Fields=S1&ExactMatch=T |
|
| Link 5: database #0 (Yeast), table #0 (Species), record(s) description is 'Zymoxenogloea eriophori', display fields 'S1' (Number of ascospores per ascus) and 'T1' (Reddish diffusing pigment), non exact match searching |
|
| http://www.mycobank.org/yeast/BioloMICS.aspx?Link=T&DB=0&Table=0&Descr=Zymoxenogloea eriophori&Fields=S1&Fields=T1&ExactMatch=T |
|
| | |
|
Contact address
| Address: | Postal address: |
Uppsalalaan 8
3584 CT Utrecht
The Netherlands
Telephone + 31 (0)30 2122600
Telefax + 31 (0)30 2512097 |
P.O.Box 85167
3508 AD Utrecht
The Netherlands |
Disclaimer and
Limitation of Liability: BioAware makes no representation or warranty whatsoever regarding the performance, use or results of the software, including without limitation, any express or implied warranties, including without limitation, the implied warranties of merchant ability and fitness for a particular purpose. In no event shall BioAware be liable for any direct, indirect, incidental, special, exemplary, or consequential damages (including without limitation, procurement of substitute goods or services, loss of use, data, or profits, or business interruption) however caused and not withstanding any theory of liability, whether in contrast, strict liability, or tort (including negligence or otherwise) arising in any way out of the software, even if advised of the possibility or probality of such damage. BioAware shall beat no responsability for the accuracy or quality of information or other results (The Information) obtained through its provision of the software, nor the use or misuse of any information by any user of the information, unauthorized use of any information protected by intellectual property rights. The user acknowledges and agrees that BioAware is merely permitting access to the information supplied throught the software, and that the user is responsible for the accuracy, truthfulness and all other matters relating to such information. Futher, the user acknowledges and agrees that the software is subject to interruption from time to time and the user's information may not be accessed by its intended user.