Pairwise sequence alignment Help Icon

  the disclaimer   and I agree with the conditions and limitations associated with the usage of the software
 
  • Pairwise sequence alignment parameters
    Minimum similarity to keep results (0-100%): Gap creation penalty (1-100):
    Minimum overlap to keep results (0-100%): Gap extension penalty (1-10):
    Minimum overlap for rating reward (0-100%): Word size (1-256):
    Maximum alignments to display (1-1000): Penalty for a nucleotide mismatch:
    Select sorting mode:
    select
    Reward for a nucleotide match:
    Select the reference(s) file(s) to be used for the alignment:
    NameLocationStatus#Match(s) found
     http://fusarium.mycobank.org/http://fusarium.mycobank.org/Unavailable  000
     http://dermatophytes.mycobank.org/http://dermatophytes.mycobank.org/Unavailable  000
     http://indoor.mycobank.org/http://indoor.mycobank.org/Unavailable  000
     http://morchella.mycobank.org/http://morchella.mycobank.org/Unavailable  000
     http://www.wi.knaw.nl/collections/http://www.wi.knaw.nl/collections/Unavailable  000
     http://ITS.mycologylab.org/http://ITS.mycologylab.org/Unavailable  000
     http://MLST.mycologylab.org/http://MLST.mycologylab.org/Unavailable  000
    PasteurMOLDhttps://fungibank.pasteur.fr/https://fungibank.pasteur.fr/Reachable E:\BioloMICSBasedBio\fungibank.pasteur.fr\Alignments\DB32.04800
    PasteurYEASThttps://fungibank.pasteur.fr/https://fungibank.pasteur.fr/Reachable E:\BioloMICSBasedBio\fungibank.pasteur.fr\Alignments\DB28.79600
    Non-redundant GenBankhttp://blast.ncbi.nlm.nih.gov/Blast.cgihttp://blast.ncbi.nlm.nih.gov/Blast.cgiReachable nr0025
 
Paste sequence to align:

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